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A comparative account of primer designing resources, feature-validations and application-based categorizations

Osprey

Tool nameOsprey
URLhttp://osprey.ucalgary.ca
Important features1. Designs PCR and microarray primers. 2. Also involves in oligo analysis
CitationsGordon PM, Sensen CW. Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays. Nucleic Acids Res. 2004 Sep 29;32(17):e133. PubMed PMID: 15456895.
Year of publication2004
Rank by usage frequency100
CommentsDid not give results when tested [as per the 5th july, 2011].
FunctionMicroarray probes, Oligo analysis, Predicting secondary structure
CategoryOnline, Free
Features1. Designs oligonucleotide for microarrays and also design negative control probes. 2. Allows for SNP checking and avoidance of regions with SNP for primer designing. 3. Designs PCR primers and reports melting temperature and other parameters for given oligonucleotides. 4. It has the option to select max dimer or hairpin energy.
Description

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